HL_6HA1_044

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAGCAAAAA

Length

11 nucleotides

Bulged bases

6HA1|1|A|A|1809, 6HA1|1|A|G|1810, 6HA1|1|A|C|1811, 6HA1|1|A|A|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_044 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.0914

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6HA1|1|A|U|1806
6HA1|1|A|U|1807
6HA1|1|A|U|1808
6HA1|1|A|A|1809
6HA1|1|A|G|1810
6HA1|1|A|C|1811
6HA1|1|A|A|1812
6HA1|1|A|A|1813
6HA1|1|A|A|1814
6HA1|1|A|A|1815
6HA1|1|A|A|1816

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2