HL_6HCF_011

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

6HCF|1|52|G|294, 6HCF|1|52|A|295, 6HCF|1|52|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_011 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.1768

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6HCF|1|52|C|289
6HCF|1|52|U|290
6HCF|1|52|U|291
6HCF|1|52|G|292
6HCF|1|52|G|293
6HCF|1|52|G|294
6HCF|1|52|A|295
6HCF|1|52|A|296
6HCF|1|52|U|297
6HCF|1|52|G|298

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain N3

Ribosomal protein L15

Chain a3

uL15

Chain o3

eL42