HL_6HCF_094

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUUUCGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCF_094 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3535

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6HCF|1|A1|U|538
6HCF|1|A1|C|539
6HCF|1|A1|U|540
6HCF|1|A1|U|541
6HCF|1|A1|U|542
6HCF|1|A1|C|543
6HCF|1|A1|G|544
6HCF|1|A1|A|545

Current chains

Chain A1

18S ribosomal RNA

Nearby chains