HL_6HCJ_033

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_033 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.3331

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6HCJ|1|51|U|2006
6HCJ|1|51|G|2007
6HCJ|1|51|U|2008
6HCJ|1|51|A|2009
6HCJ|1|51|A|2010
6HCJ|1|51|C|2011
6HCJ|1|51|A|2012
6HCJ|1|51|A|2013

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain m3

eL40

Chain t3

uL10

Chain u3

Ribosomal protein L12