HL_6HCJ_107

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGCGAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCJ_107 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.395

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6HCJ|1|A2|G|1352
6HCJ|1|A2|A|1353
6HCJ|1|A2|G|1354
6HCJ|1|A2|C|1355
6HCJ|1|A2|G|1356
6HCJ|1|A2|A|1357
6HCJ|1|A2|U|1358
6HCJ|1|A2|U|1359

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain B2

uS2

Chain D2

uS5