HL_6HCM_011

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

6HCM|1|52|G|294, 6HCM|1|52|A|295, 6HCM|1|52|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_011 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.1768

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6HCM|1|52|C|289
6HCM|1|52|U|290
6HCM|1|52|U|291
6HCM|1|52|G|292
6HCM|1|52|G|293
6HCM|1|52|G|294
6HCM|1|52|A|295
6HCM|1|52|A|296
6HCM|1|52|U|297
6HCM|1|52|G|298

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain N3

Ribosomal protein L15

Chain a3

uL15

Chain o3

eL42