HL_6HCM_088

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

6HCM|1|A1|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_088 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2557

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6HCM|1|A1|G|288
6HCM|1|A1|G|289
6HCM|1|A1|U|290
6HCM|1|A1|G|291
6HCM|1|A1|A|292
6HCM|1|A1|C|293
6HCM|1|A1|U|294
6HCM|1|A1|C|295

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

eS4

Chain H1

40S ribosomal protein S6

Chain M1

Ribosomal protein S11