HL_6HCM_105

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6HCM|1|A1|A|1253

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_105 not in the Motif Atlas

Geometric match to HL_4V88_212

Geometric discrepancy: 0.2132

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6HCM|1|A1|G|1245
6HCM|1|A1|A|1246
6HCM|1|A1|C|1247
6HCM|1|A1|U|1248
6HCM|1|A1|C|1249
6HCM|1|A1|A|1250
6HCM|1|A1|A|1251
6HCM|1|A1|C|1252
6HCM|1|A1|A|1253
6HCM|1|A1|C|1254

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain R1

Ribosomal protein S16

Chain V1

uS10

Chain e1

uS14

Chain j1

eRF1(AAQ)