HL_6HCM_172
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 6HCM|1|52|U|3802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HCM_172 not in the Motif Atlas
- Homologous match to HL_8CRE_048
- Geometric discrepancy: 0.1731
- The information below is about HL_8CRE_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20167.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6HCM|1|52|U|3796
6HCM|1|52|C|3797
6HCM|1|52|U|3798
6HCM|1|52|A|3799
6HCM|1|52|A|3800
6HCM|1|52|U|3801
6HCM|1|52|U|3802
6HCM|1|52|A|3803
6HCM|1|52|G|3804
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain V3
- Ribosomal protein L23
- Chain j1
- eRF1(AAQ)
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