3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
UCUAAUUAG
Length
9 nucleotides
Bulged bases
6HCM|1|52|U|3802
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6HCM_172 not in the Motif Atlas
Homologous match to HL_8CRE_048
Geometric discrepancy: 0.1731
The information below is about HL_8CRE_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_20167.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

6HCM|1|52|U|3796
6HCM|1|52|C|3797
6HCM|1|52|U|3798
6HCM|1|52|A|3799
6HCM|1|52|A|3800
6HCM|1|52|U|3801
6HCM|1|52|U|3802
6HCM|1|52|A|3803
6HCM|1|52|G|3804

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain A1
Small subunit ribosomal RNA; SSU rRNA
Chain V3
Ribosomal protein L23
Chain j1
eRF1(AAQ)

Coloring options:


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