HL_6HCM_172

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6HCM|1|52|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCM_172 not in the Motif Atlas

Homologous match to HL_8CRE_048

Geometric discrepancy: 0.1731

The information below is about HL_8CRE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6HCM|1|52|U|3796
6HCM|1|52|C|3797
6HCM|1|52|U|3798
6HCM|1|52|A|3799
6HCM|1|52|A|3800
6HCM|1|52|U|3801
6HCM|1|52|U|3802
6HCM|1|52|A|3803
6HCM|1|52|G|3804

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain V3

Ribosomal protein L23

Chain j1

eRF1(AAQ)