HL_6HCQ_027

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6HCQ|1|51|A|1630

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_027 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.2328

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6HCQ|1|51|G|1627
6HCQ|1|51|C|1628
6HCQ|1|51|G|1629
6HCQ|1|51|A|1630
6HCQ|1|51|A|1631
6HCQ|1|51|A|1632
6HCQ|1|51|G|1633
6HCQ|1|51|A|1634
6HCQ|1|51|C|1635

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain N3

Ribosomal protein L15

Chain j3

Ribosomal protein L37