HL_6HCQ_046

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

6HCQ|1|51|C|2794, 6HCQ|1|51|G|2796, 6HCQ|1|51|A|2798

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_046 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.1999

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6HCQ|1|51|C|2792
6HCQ|1|51|G|2793
6HCQ|1|51|C|2794
6HCQ|1|51|A|2795
6HCQ|1|51|G|2796
6HCQ|1|51|C|2797
6HCQ|1|51|A|2798
6HCQ|1|51|G|2799

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 1

nascent chain

Chain C3

uL4

Chain P3

uL22

Chain j3

Ribosomal protein L37

Chain l3

eL39