HL_6HCQ_159

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

6HCQ|1|51|G|294, 6HCQ|1|51|A|295, 6HCQ|1|51|A|296

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HCQ_159 not in the Motif Atlas

Homologous match to HL_8CRE_008

Geometric discrepancy: 0.2628

The information below is about HL_8CRE_008

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6HCQ|1|51|C|289
6HCQ|1|51|U|290
6HCQ|1|51|U|291
6HCQ|1|51|G|292
6HCQ|1|51|G|293
6HCQ|1|51|G|294
6HCQ|1|51|A|295
6HCQ|1|51|A|296
6HCQ|1|51|U|297
6HCQ|1|51|G|298

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain N3

Ribosomal protein L15

Chain a3

uL15

Chain o3

eL42