HL_6HD7_028

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6HD7|1|1|U|1241, 6HD7|1|1|G|1242, 6HD7|1|1|A|1245, 6HD7|1|1|C|1248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_028 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.4375

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6HD7|1|1|C|1239
6HD7|1|1|A|1240
6HD7|1|1|U|1241
6HD7|1|1|G|1242
6HD7|1|1|G|1243
6HD7|1|1|A|1244
6HD7|1|1|A|1245
6HD7|1|1|G|1246
6HD7|1|1|U|1247
6HD7|1|1|C|1248
6HD7|1|1|G|1249

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains