HL_6HD7_064

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6HD7|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HD7_064 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.2271

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6HD7|1|1|A|2897
6HD7|1|1|G|2898
6HD7|1|1|C|2899
6HD7|1|1|A|2900
6HD7|1|1|G|2901
6HD7|1|1|A|2902
6HD7|1|1|A|2903
6HD7|1|1|U|2904

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain L

60S ribosomal protein L9-A

Chain o

Ubiquitin-60S ribosomal protein L40