HL_6HD7_077
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6HD7|1|4|C|84, 6HD7|1|4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6HD7_077 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.3707
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6HD7|1|4|U|69
6HD7|1|4|G|70
6HD7|1|4|A|71
6HD7|1|4|A|72
6HD7|1|4|U|73
6HD7|1|4|U|74
6HD7|1|4|G|75
6HD7|1|4|C|76
6HD7|1|4|A|77
6HD7|1|4|G|78
6HD7|1|4|A|79
6HD7|1|4|A|80
6HD7|1|4|U|81
6HD7|1|4|U|82
6HD7|1|4|C|83
6HD7|1|4|C|84
6HD7|1|4|G|85
6HD7|1|4|U|86
6HD7|1|4|G|87
6HD7|1|4|A|88
6HD7|1|4|A|89
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- 60S ribosomal protein L26-A
- Chain j
- 60S ribosomal protein L35-A
- Chain l
- 60S ribosomal protein L37-A
- Chain n
- 60S ribosomal protein L39
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