HL_6HTQ_076

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

6HTQ|1|a|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_076 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.165

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6HTQ|1|a|G|267
6HTQ|1|a|G|268
6HTQ|1|a|U|269
6HTQ|1|a|A|270
6HTQ|1|a|A|271
6HTQ|1|a|C|272
6HTQ|1|a|G|273
6HTQ|1|a|G|274
6HTQ|1|a|C|275

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20