HL_6HTQ_116

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGAAUAGG

Length

9 nucleotides

Bulged bases

6HTQ|1|A|U|691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HTQ_116 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.2619

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6HTQ|1|A|C|686
6HTQ|1|A|U|687
6HTQ|1|A|G|688
6HTQ|1|A|A|689
6HTQ|1|A|A|690
6HTQ|1|A|U|691
6HTQ|1|A|A|692
6HTQ|1|A|G|693
6HTQ|1|A|G|694

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L33 1

Chain 4

50S ribosomal protein L35

Chain L

50S ribosomal protein L15