HL_6I7O_027

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6I7O|1|2|G|1243, 6I7O|1|2|G|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_027 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2384

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6I7O|1|2|A|1238
6I7O|1|2|U|1239
6I7O|1|2|U|1240
6I7O|1|2|G|1241
6I7O|1|2|A|1242
6I7O|1|2|G|1243
6I7O|1|2|A|1244
6I7O|1|2|G|1245
6I7O|1|2|C|1246
6I7O|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain M

40S ribosomal protein S29-A

Chain N

Ubiquitin-40S ribosomal protein S31