HL_6I7O_042

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6I7O|1|2b|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_042 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.1353

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6I7O|1|2b|G|243
6I7O|1|2b|A|244
6I7O|1|2b|U|245
6I7O|1|2b|G|246
6I7O|1|2b|A|247
6I7O|1|2b|U|248
6I7O|1|2b|U|249
6I7O|1|2b|C|250

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Sb

40S ribosomal protein S4-A

Chain Tb

40S ribosomal protein S6-A

Chain Xb

40S ribosomal protein S11-A