HL_6I7O_066

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6I7O|1|2b|U|1314

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_066 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.124

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6I7O|1|2b|C|1309
6I7O|1|2b|U|1310
6I7O|1|2b|U|1311
6I7O|1|2b|A|1312
6I7O|1|2b|A|1313
6I7O|1|2b|U|1314
6I7O|1|2b|U|1315
6I7O|1|2b|G|1316

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Gb

40S ribosomal protein S17-A