HL_6I7O_088
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GUGUAAAAC
- Length
- 9 nucleotides
- Bulged bases
- 6I7O|1|BQ|U|689, 6I7O|1|BQ|A|691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_088 not in the Motif Atlas
- Homologous match to HL_5TBW_015
- Geometric discrepancy: 0.1173
- The information below is about HL_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6I7O|1|BQ|G|686
6I7O|1|BQ|U|687
6I7O|1|BQ|G|688
6I7O|1|BQ|U|689
6I7O|1|BQ|A|690
6I7O|1|BQ|A|691
6I7O|1|BQ|A|692
6I7O|1|BQ|A|693
6I7O|1|BQ|C|694
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AK
- 60S ribosomal protein L26-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain BE
- 60S ribosomal protein L4-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
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