HL_6I7O_101

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_101 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2067

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6I7O|1|BQ|U|1267
6I7O|1|BQ|G|1268
6I7O|1|BQ|U|1269
6I7O|1|BQ|A|1270
6I7O|1|BQ|A|1271
6I7O|1|BQ|C|1272
6I7O|1|BQ|A|1273
6I7O|1|BQ|A|1274

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains