HL_6I7O_119

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

6I7O|1|BQ|A|2138, 6I7O|1|BQ|A|2139, 6I7O|1|BQ|U|2140, 6I7O|1|BQ|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_119 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.1122

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6I7O|1|BQ|U|2135
6I7O|1|BQ|C|2136
6I7O|1|BQ|U|2137
6I7O|1|BQ|A|2138
6I7O|1|BQ|A|2139
6I7O|1|BQ|U|2140
6I7O|1|BQ|U|2141
6I7O|1|BQ|A|2142
6I7O|1|BQ|A|2143
6I7O|1|BQ|A|2144
6I7O|1|BQ|A|2145

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AW

60S ribosomal protein L2-A