HL_6I7O_155

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

6I7O|1|YQ|U|133, 6I7O|1|YQ|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_155 not in the Motif Atlas

Homologous match to HL_5TBW_004

Geometric discrepancy: 0.2084

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6I7O|1|YQ|C|132
6I7O|1|YQ|U|133
6I7O|1|YQ|U|134
6I7O|1|YQ|C|135
6I7O|1|YQ|G|136

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XQ

60S ribosomal protein L15-A

Chain YP

60S ribosomal protein L35-A