HL_6I7O_213

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6I7O_213 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.2064

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6I7O|1|YQ|C|2840
6I7O|1|YQ|G|2841
6I7O|1|YQ|U|2842
6I7O|1|YQ|U|2843
6I7O|1|YQ|C|2844
6I7O|1|YQ|A|2845
6I7O|1|YQ|U|2846
6I7O|1|YQ|A|2847
6I7O|1|YQ|G|2848

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XO

Ubiquitin-60S ribosomal protein L40

Chain YD

60S ribosomal protein L10