HL_6I7O_239
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GGAUUAGGAAUCC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6I7O_239 not in the Motif Atlas
- Homologous match to HL_6GSL_221
- Geometric discrepancy: 0.4156
- The information below is about HL_6GSL_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06285.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6I7O|1|nb|G|29
6I7O|1|nb|G|30
6I7O|1|nb|A|31
6I7O|1|nb|U|32
6I7O|1|nb|U|33
6I7O|1|nb|A|34
6I7O|1|nb|G|35
6I7O|1|nb|G|36
6I7O|1|nb|A|37
6I7O|1|nb|A|38
6I7O|1|nb|U|39
6I7O|1|nb|C|40
6I7O|1|nb|C|41
Current chains
- Chain nb
- A/P hybrid tRNA
Nearby chains
- Chain 2b
- Small subunit ribosomal RNA; SSU rRNA
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain cb
- 40S ribosomal protein S23-A
- Chain l
- mRNA
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