HL_6IP5_050

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

6IP5|1|1A|A|3642, 6IP5|1|1A|A|3643, 6IP5|1|1A|U|3644, 6IP5|1|1A|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_050 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1601

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6IP5|1|1A|U|3639
6IP5|1|1A|U|3640
6IP5|1|1A|U|3641
6IP5|1|1A|A|3642
6IP5|1|1A|A|3643
6IP5|1|1A|U|3644
6IP5|1|1A|U|3645
6IP5|1|1A|A|3646
6IP5|1|1A|A|3647
6IP5|1|1A|A|3648
6IP5|1|1A|A|3649

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2d

60S ribosomal protein L37

Chain zx

nascent peptide