HL_6IP5_093

3D structure

PDB id

6IP5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGACCCGG

Length

9 nucleotides

Bulged bases

6IP5|1|2m|A|500, 6IP5|1|2m|C|502, 6IP5|1|2m|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP5_093 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3416

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6IP5|1|2m|C|497
6IP5|1|2m|C|498
6IP5|1|2m|G|499
6IP5|1|2m|A|500
6IP5|1|2m|C|501
6IP5|1|2m|C|502
6IP5|1|2m|C|503
6IP5|1|2m|G|504
6IP5|1|2m|G|505

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2q

40S ribosomal protein S4, X isoform

Chain 3N

40S ribosomal protein S24