HL_6IP6_060

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6IP6|1|1A|A|4214, 6IP6|1|1A|C|4221

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_060 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1624

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6IP6|1|1A|U|4210
6IP6|1|1A|C|4211
6IP6|1|1A|A|4212
6IP6|1|1A|A|4213
6IP6|1|1A|A|4214
6IP6|1|1A|C|4215
6IP6|1|1A|G|4216
6IP6|1|1A|G|4217
6IP6|1|1A|U|4218
6IP6|1|1A|A|4219
6IP6|1|1A|A|4220
6IP6|1|1A|C|4221
6IP6|1|1A|G|4222

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like

Chain 2N

60S ribosomal protein L21

Chain 2V

60S ribosomal protein L29