HL_6IP6_109

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

6IP6|1|2m|U|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_109 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1946

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6IP6|1|2m|G|1366
6IP6|1|2m|U|1367
6IP6|1|2m|U|1368
6IP6|1|2m|A|1369
6IP6|1|2m|A|1370
6IP6|1|2m|U|1371
6IP6|1|2m|U|1372
6IP6|1|2m|C|1373

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2y

40S ribosomal protein S17