HL_6IP6_117

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUAGGGGUAUG

Length

11 nucleotides

Bulged bases

6IP6|1|zy|G|16, 6IP6|1|zy|G|17, 6IP6|1|zy|G|18, 6IP6|1|zy|U|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_117 not in the Motif Atlas

Homologous match to HL_8JOZ_001

Geometric discrepancy: 0.385

The information below is about HL_8JOZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55043.2

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

6IP6|1|zy|C|12
6IP6|1|zy|U|13
6IP6|1|zy|A|14
6IP6|1|zy|G|15
6IP6|1|zy|G|16
6IP6|1|zy|G|17
6IP6|1|zy|G|18
6IP6|1|zy|U|19
6IP6|1|zy|A|20
6IP6|1|zy|U|21
6IP6|1|zy|G|22

Current chains

Chain zy

P-site tRNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 2E

60S ribosomal protein L11

Chain 2i

60S ribosomal protein L36a