HL_6IP8_024
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 6IP8|1|1A|U|1596, 6IP8|1|1A|A|1600
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP8_024 not in the Motif Atlas
- Homologous match to HL_5TBW_020
- Geometric discrepancy: 0.1484
- The information below is about HL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
6IP8|1|1A|A|1593
6IP8|1|1A|C|1594
6IP8|1|1A|G|1595
6IP8|1|1A|U|1596
6IP8|1|1A|G|1597
6IP8|1|1A|C|1598
6IP8|1|1A|A|1599
6IP8|1|1A|A|1600
6IP8|1|1A|A|1601
6IP8|1|1A|U|1602
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1E
- 60S ribosomal protein L3
- Chain 2J
- 60S ribosomal protein L17
- Chain 2d
- 60S ribosomal protein L37
- Chain zx
- nascent peptide
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