HL_6LKQ_043

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6LKQ|1|t|G|386, 6LKQ|1|t|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_043 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1262

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6LKQ|1|t|A|382
6LKQ|1|t|C|383
6LKQ|1|t|A|384
6LKQ|1|t|C|385
6LKQ|1|t|G|386
6LKQ|1|t|U|387
6LKQ|1|t|G|388
6LKQ|1|t|G|389
6LKQ|1|t|U|390
6LKQ|1|t|A|391
6LKQ|1|t|U|392

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L28