HL_6LQS_011

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6LQS|1|SA|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQS_011 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.5032

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6LQS|1|SA|G|243
6LQS|1|SA|A|244
6LQS|1|SA|U|245
6LQS|1|SA|G|246
6LQS|1|SA|A|247
6LQS|1|SA|U|248
6LQS|1|SA|U|249
6LQS|1|SA|C|250

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain SF

40S ribosomal protein S4-A

Chain SH

40S ribosomal protein S6-A

Chain SM

40S ribosomal protein S11-A