HL_6LQS_013

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

6LQS|1|SA|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQS_013 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.3586

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6LQS|1|SA|G|330
6LQS|1|SA|A|331
6LQS|1|SA|U|332
6LQS|1|SA|A|333
6LQS|1|SA|G|334
6LQS|1|SA|U|335
6LQS|1|SA|G|336
6LQS|1|SA|G|337
6LQS|1|SA|C|338

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A