HL_6LQU_017
3D structure
- PDB id
- 6LQU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAUAGUGGC
- Length
- 9 nucleotides
- Bulged bases
- 6LQU|1|SA|G|337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQU_017 not in the Motif Atlas
- Homologous match to HL_4V88_193
- Geometric discrepancy: 0.1862
- The information below is about HL_4V88_193
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_82182.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
6LQU|1|SA|G|330
6LQU|1|SA|A|331
6LQU|1|SA|U|332
6LQU|1|SA|A|333
6LQU|1|SA|G|334
6LQU|1|SA|U|335
6LQU|1|SA|G|336
6LQU|1|SA|G|337
6LQU|1|SA|C|338
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RA
- Ribosome biogenesis protein ENP2
- Chain RY
- Protein BFR2
- Chain SJ
- 40S ribosomal protein S8-A
- Chain SM
- 40S ribosomal protein S11-A
Coloring options: