HL_6LSR_050

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

6LSR|1|2|A|3642, 6LSR|1|2|A|3643, 6LSR|1|2|U|3644, 6LSR|1|2|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_050 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.1754

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6LSR|1|2|U|3639
6LSR|1|2|U|3640
6LSR|1|2|U|3641
6LSR|1|2|A|3642
6LSR|1|2|A|3643
6LSR|1|2|U|3644
6LSR|1|2|U|3645
6LSR|1|2|A|3646
6LSR|1|2|A|3647
6LSR|1|2|A|3648
6LSR|1|2|A|3649

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 0

Zinc finger protein 622

Chain M

60S ribosomal protein L37

Chain m

60S ribosomal protein L8