HL_6LSR_053

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6LSR|1|2|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_053 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0985

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6LSR|1|2|U|3796
6LSR|1|2|C|3797
6LSR|1|2|U|3798
6LSR|1|2|A|3799
6LSR|1|2|A|3800
6LSR|1|2|U|3801
6LSR|1|2|U|3802
6LSR|1|2|A|3803
6LSR|1|2|G|3804

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 1

Large subunit GTPase 1 homolog

Chain 3

60S ribosomal export protein NMD3

Chain e

60S ribosomal protein L23