HL_6LSR_058

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

6LSR|1|2|A|4214, 6LSR|1|2|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LSR_058 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1323

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6LSR|1|2|U|4210
6LSR|1|2|C|4211
6LSR|1|2|A|4212
6LSR|1|2|A|4213
6LSR|1|2|A|4214
6LSR|1|2|C|4215
6LSR|1|2|G|4216
6LSR|1|2|G|4217
6LSR|1|2|U|4218
6LSR|1|2|A|4219
6LSR|1|2|6MZ|4220
6LSR|1|2|C|4221
6LSR|1|2|G|4222

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3

Chain C

60S ribosomal protein L29

Chain c

60S ribosomal protein L21