HL_6M62_028

3D structure

PDB id

6M62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6M62_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.4007

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6M62|1|1|U|1267
6M62|1|1|G|1268
6M62|1|1|U|1269
6M62|1|1|A|1270
6M62|1|1|A|1271
6M62|1|1|C|1272
6M62|1|1|A|1273
6M62|1|1|A|1274

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2