HL_6N1D_006

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6N1D|1|A16S|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1578

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6N1D|1|A16S|G|259
6N1D|1|A16S|G|260
6N1D|1|A16S|U|261
6N1D|1|A16S|A|262
6N1D|1|A16S|A|263
6N1D|1|A16S|U|264
6N1D|1|A16S|G|265
6N1D|1|A16S|G|266
6N1D|1|A16S|C|267

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS17

30S ribosomal protein S17

Chain AS20

30S ribosomal protein S20