HL_6N1D_099

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6N1D|1|A23S|G|2751, 6N1D|1|A23S|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_099 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1936

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6N1D|1|A23S|C|2745
6N1D|1|A23S|U|2746
6N1D|1|A23S|G|2747
6N1D|1|A23S|A|2748
6N1D|1|A23S|A|2749
6N1D|1|A23S|A|2750
6N1D|1|A23S|G|2751
6N1D|1|A23S|C|2752
6N1D|1|A23S|A|2753
6N1D|1|A23S|U|2754
6N1D|1|A23S|C|2755
6N1D|1|A23S|U|2756
6N1D|1|A23S|A|2757
6N1D|1|A23S|A|2758
6N1D|1|A23S|G|2759

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL06

50S ribosomal protein L6

Chain AL13

50S ribosomal protein L13

Chain AL36

50S ribosomal protein L36