3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGGUGAAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6N1D_122 not in the Motif Atlas
Homologous match to HL_4LFB_015
Geometric discrepancy: 0.1439
The information below is about HL_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

6N1D|1|B16S|C|689
6N1D|1|B16S|G|690
6N1D|1|B16S|G|691
6N1D|1|B16S|U|692
6N1D|1|B16S|G|693
6N1D|1|B16S|A|694
6N1D|1|B16S|A|695
6N1D|1|B16S|A|696
6N1D|1|B16S|U|697
6N1D|1|B16S|G|698

Current chains

Chain B16S
16S rRNA

Nearby chains

Chain B23S
Large subunit ribosomal RNA; LSU rRNA
Chain BMRN
mRNA
Chain BPTN
Transfer RNA; tRNA
Chain BS11
30S ribosomal protein S11

Coloring options:


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