HL_6N1D_200

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

6N1D|1|B23S|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6N1D_200 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.3989

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6N1D|1|B23S|C|2471
6N1D|1|B23S|G|2472
6N1D|1|B23S|U|2473
6N1D|1|B23S|C|2474
6N1D|1|B23S|C|2475
6N1D|1|B23S|A|2476
6N1D|1|B23S|C|2477
6N1D|1|B23S|A|2478
6N1D|1|B23S|G|2479

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL16

50S ribosomal protein L16

Chain BL36

50S ribosomal protein L36