HL_6N8J_046
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6N8J|1|1|A|2138, 6N8J|1|1|A|2139, 6N8J|1|1|U|2140, 6N8J|1|1|A|2144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8J_046 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.161
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
6N8J|1|1|U|2135
6N8J|1|1|C|2136
6N8J|1|1|U|2137
6N8J|1|1|A|2138
6N8J|1|1|A|2139
6N8J|1|1|U|2140
6N8J|1|1|U|2141
6N8J|1|1|A|2142
6N8J|1|1|A|2143
6N8J|1|1|A|2144
6N8J|1|1|A|2145
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain j
- 60S ribosomal protein L37-A
- Chain m
- Nucleolar GTP-binding protein 2
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