HL_6N8J_073
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6N8J|1|3|C|84, 6N8J|1|3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8J_073 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.1588
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6N8J|1|3|U|69
6N8J|1|3|G|70
6N8J|1|3|A|71
6N8J|1|3|A|72
6N8J|1|3|U|73
6N8J|1|3|U|74
6N8J|1|3|G|75
6N8J|1|3|C|76
6N8J|1|3|A|77
6N8J|1|3|G|78
6N8J|1|3|A|79
6N8J|1|3|A|80
6N8J|1|3|U|81
6N8J|1|3|U|82
6N8J|1|3|C|83
6N8J|1|3|C|84
6N8J|1|3|G|85
6N8J|1|3|U|86
6N8J|1|3|G|87
6N8J|1|3|A|88
6N8J|1|3|A|89
Current chains
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S ribosomal protein L26-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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