HL_6N8J_080
3D structure
- PDB id
- 6N8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- 6N8J|1|1|U|2842
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6N8J_080 not in the Motif Atlas
- Homologous match to HL_8C3A_062
- Geometric discrepancy: 0.5008
- The information below is about HL_8C3A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82661.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6N8J|1|1|C|2840
6N8J|1|1|G|2841
6N8J|1|1|U|2842
6N8J|1|1|U|2843
6N8J|1|1|C|2844
6N8J|1|1|A|2845
6N8J|1|1|U|2846
6N8J|1|1|A|2847
6N8J|1|1|G|2848
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain S
- 60S ribosomal protein L20-A
- Chain T
- 60S ribosomal protein L21-A
Coloring options: