HL_6OGI_049
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGUGAAGAUGCA
- Length
- 12 nucleotides
- Bulged bases
- 6OGI|1|1|A|2030, 6OGI|1|1|A|2031, 6OGI|1|1|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OGI_049 not in the Motif Atlas
- Geometric match to HL_4V7M_040
- Geometric discrepancy: 0.398
- The information below is about HL_4V7M_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6OGI|1|1|U|2026
6OGI|1|1|G|2027
6OGI|1|1|U|2028
6OGI|1|1|G|2029
6OGI|1|1|A|2030
6OGI|1|1|A|2031
6OGI|1|1|G|2032
6OGI|1|1|A|2033
6OGI|1|1|U|2034
6OGI|1|1|G|2035
6OGI|1|1|C|2036
6OGI|1|1|A|2037
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L32
- Chain c
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
- Chain r
- 50S ribosomal protein L21
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