HL_6OIG_049

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6OIG|1|5|A|2256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_049 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.5161

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6OIG|1|5|G|2253
6OIG|1|5|U|2254
6OIG|1|5|A|2255
6OIG|1|5|A|2256
6OIG|1|5|C|2257
6OIG|1|5|U|2258
6OIG|1|5|A|2259
6OIG|1|5|U|2260
6OIG|1|5|G|2261
6OIG|1|5|A|2262
6OIG|1|5|C|2263

Current chains

Chain 5

25S ribosomal RNA

Nearby chains