3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUGGCGUG
Length
8 nucleotides
Bulged bases
6OLF|1|t|G|1803
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OLF_070 not in the Motif Atlas
Homologous match to HL_5TBW_024
Geometric discrepancy: 0.5396
The information below is about HL_5TBW_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

6OLF|1|t|C|1798
6OLF|1|t|U|1799
6OLF|1|t|G|1800
6OLF|1|t|G|1801
6OLF|1|t|C|1802
6OLF|1|t|G|1803
6OLF|1|t|U|1804
6OLF|1|t|G|1805

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain F
60S ribosomal protein L5
Chain U
60S ribosomal protein L21
Chain c
60S ribosomal protein L29

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